These apple cupcakes are soft, tender, and filled with cozy fall flavor. Grated apples and warm spices make each bite perfectly moist and aromatic, while a swirl of spiced cream cheese frosting adds the dreamiest finishing touch.
Preheat the oven to 350°F (175°C). Line a standard muffin pan with 12 paper liners.
In a medium bowl, whisk together the flour, baking powder, baking soda, salt, cinnamon, nutmeg, and allspice.
Using an electric mixer on medium speed, beat the butter, brown sugar, and granulated sugar until light and fluffy (2–3 minutes).
Beat in eggs one at a time, then mix in vanilla.
With the mixer on low speed, mix in the dry ingredients in three portions, alternating with two portions of the sour cream. Mix just until combined.
Gently fold in the grated apples. The batter will be thick.
Divide the batter evenly among the muffin cups. Bake 18–22 minutes, or until a toothpick comes out clean.
Cool in the pan for 5 minutes, then transfer to a wire rack to cool completely.
To make the frosting:
Using an electric mixer on medium speed, beat the cream cheese and butter until smooth.
Add the confectioners’ sugar gradually, then add the vanilla, cinnamon, and nutmeg. Beat until light and fluffy.
Spread or pipe the frosting onto the cooled cupcakes. Garnish as desired.
Notes
Apples: For balanced flavor, use a mix of sweet and tart apples. (Gala and Granny Smith are a great combo.) Grate them on the large holes of a box grater so they add moisture and texture without turning the batter wet or mushy. Toss with a little lemon juice if you’re grating ahead of time. This keeps the shreds from oxidizing and browning.
Sour cream: Adds richness and a soft, tender crumb. You can substitute buttermilk if that’s what you have on hand.
Flour measurement: For accuracy, weigh your flour (1 cup = 120g) or lightly spoon it into the cup and level it off. Too much flour can make the cupcakes dense.
Frosting tip: Chill briefly (15–20 minutes) if the frosting is too soft to pipe cleanly.
Storage: Store cupcakes in an airtight container in the refrigerator for up to 5 days. Let them come to room temperature before serving.
Freezing: Unfrosted cupcakes can be frozen for up to 3 months. Thaw and frost before serving.
Garnish ideas:
Dusting of cinnamon over the frosting
Sprinkle of finely chopped pecans or walnuts on top
Caramel drizzle
Thin apple slices (fresh, dried, or baked into crisp chips) tucked into the frosting. (Apple chips especially give a polished look without worrying about browning.)
A pecan half pressed gently into the top for a rustic finish.